3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02101

Details:

PFam ID : PF02101

PFam Domain Description : Ocular albinism type 1 protein

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 27

Average sequence length: 286.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02101	E3X7W5_ANODA_3_152	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02101	A7RKB4_NEMVE_5_354	100

Sequence based PCA Plot of the family - PF02101 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=125 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay