3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02099

Details:

PFam ID : PF02099

PFam Domain Description : Josephin

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 172

Average sequence length: 143.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02099	Q4XFP4_PLACH_1_49	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02099	Q4XFP4_PLACH_1_49	100

Sequence based PCA Plot of the family - PF02099 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=272 Length=8
Motif2 Start=224 Length=8
Motif3 Start=7 Length=8
Motif4 Start=177 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay