3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02098

Details:

PFam ID : PF02098

PFam Domain Description : Tick histamine binding protein

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 168

Average sequence length: 137.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02098	B5M7B3_AMBAM_88_148	97.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02098	Q4PMM1_IXOSC_38_182	97.0

Sequence based PCA Plot of the family - PF02098 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=20
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay