3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02097

Details:

PFam ID : PF02097

PFam Domain Description : Haemagluttinin repeat

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 7

Average sequence length: 276.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02097	O36427_9MONO_1_329	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02097	O36427_9MONO_1_329	100

Sequence based PCA Plot of the family - PF02097 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=310 Length=8
Motif3 Start=300 Length=8
Motif4 Start=155 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay