3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02096

Details:

PFam ID : PF02096

PFam Domain Description : 60Kd inner membrane protein

Number of Sequence in 50% Dataset : 294

Number of Sequence in Full Dataset : 1579

Average sequence length: 206.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02096	C4JM09_UNCRE_19_167	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02096	B7AU76_9BACE_36_159	100

Sequence based PCA Plot of the family - PF02096 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=8
Motif2 Start=32 Length=8
Motif3 Start=1 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay