3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02093

Details:

PFam ID : PF02093

PFam Domain Description : Gag P30 core shell protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 33

Average sequence length: 154.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02093	F1NQW7_CHICK_12_151	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02093	Q86UH9_HUMAN_214_425	100

Sequence based PCA Plot of the family - PF02093 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay