3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02092

Details:

PFam ID : PF02092

PFam Domain Description : Glycyl-tRNA synthetase beta subunit

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 774

Average sequence length: 532.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02092	P94617_COXBU_1_255	83.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02092	C5Z231_SORBI_396_546	100

Sequence based PCA Plot of the family - PF02092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay