3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02091

Details:

PFam ID : PF02091

PFam Domain Description : Glycyl-tRNA synthetase alpha subunit

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 480

Average sequence length: 275.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02091	C6UN71_HODCD_9_270	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02091	E6PM44_9ZZZZ_211_323	99.7

Sequence based PCA Plot of the family - PF02091 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=8
Motif2 Start=1 Length=8
Motif3 Start=42 Length=8
Motif4 Start=27 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay