3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02088

Details:

PFam ID : PF02088

PFam Domain Description : Ornatin

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 5

Average sequence length: 28.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02088	ORND_PLAOR_10_28	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02088	ORNB_PLAOR_10_50	100

Sequence based PCA Plot of the family - PF02088 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay