3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02085

Details:

PFam ID : PF02085

PFam Domain Description : Class III cytochrome C family

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 444

Average sequence length: 91.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02085	A5G7P0_GEOUR_103_168	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02085	Q2W2V8_MAGSA_47_167	100

Sequence based PCA Plot of the family - PF02085 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay