3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02082

Details:

PFam ID : PF02082

PFam Domain Description : Transcriptional regulator

Number of Sequence in 50% Dataset : 171

Number of Sequence in Full Dataset : 2285

Average sequence length: 80.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02082	D5XCU6_THEPJ_2_75	65.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02082	Q2S4J6_SALRD_54_148	100

Sequence based PCA Plot of the family - PF02082 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=33 Length=8
Motif3 Start=3 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay