3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02081

Details:

PFam ID : PF02081

PFam Domain Description : Tryptophan RNA-binding attenuator protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 54

Average sequence length: 71.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02081	Q3ISK7_NATPD_571_618	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02081	E5V552_9BACL_1_68	100

Sequence based PCA Plot of the family - PF02081 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay