3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02080

Details:

PFam ID : PF02080

PFam Domain Description : TrkA-C domain

Number of Sequence in 50% Dataset : 1030

Number of Sequence in Full Dataset : 4965

Average sequence length: 69.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02080	Q3ISK7_NATPD_571_618	78.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02080	E6Q4R7_9ZZZZ_146_213	100

Sequence based PCA Plot of the family - PF02080 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=30 Length=8
Motif3 Start=10 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay