3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02075

Details:

PFam ID : PF02075

PFam Domain Description : Crossover junction endodeoxyribonuclease RuvC

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 879

Average sequence length: 147.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02075	F1X477_MORCA_8_169	88

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02075	A7KUW6_9CAUD_3_164	100

Sequence based PCA Plot of the family - PF02075 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=118 Length=8
Motif2 Start=1 Length=17
Motif3 Start=154 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay