3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02074

Details:

PFam ID : PF02074

PFam Domain Description : Carboxypeptidase Taq (M32) metallopeptidase

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 439

Average sequence length: 467.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02074	A8JC76_CHLRE_248_301	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02074	D2VMT5_NAEGR_5_525	100

Sequence based PCA Plot of the family - PF02074 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=113 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay