3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02070

Details:

PFam ID : PF02070

PFam Domain Description : Neuromedin U

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 27

Average sequence length: 28.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02070	F1STF6_PIG_120_134	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02070	NMU_MOUSE_144_166	96.1

Sequence based PCA Plot of the family - PF02070 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay