3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02067

Details:

PFam ID : PF02067

PFam Domain Description : Metallothionein family 5

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 23

Average sequence length: 38.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02067	D4RGI0_ENTFC_167_228	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02067	B4JXT9_DROGR_1_36	100

Sequence based PCA Plot of the family - PF02067 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay