3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02065

Details:

PFam ID : PF02065

PFam Domain Description : Melibiase

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 1274

Average sequence length: 235.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02065	D4RGI0_ENTFC_167_228	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02065	E8MZQ9_ANATU_235_645	100

Sequence based PCA Plot of the family - PF02065 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=111 Length=8
Motif3 Start=71 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay