3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02057

Details:

PFam ID : PF02057

PFam Domain Description : Glycosyl hydrolase family 59

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 56

Average sequence length: 520.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02057	A9UXR4_MONBE_1_303	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02057	F2TVZ9_9EUKA_12_691	100

Sequence based PCA Plot of the family - PF02057 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=17
Motif2 Start=170 Length=8
Motif3 Start=149 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay