3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02056

Details:

PFam ID : PF02056

PFam Domain Description : Family 4 glycosyl hydrolase

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 519

Average sequence length: 177.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02056	B6G9L3_9ACTN_1_70	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02056	A8ME36_CALMQ_9_196	100

Sequence based PCA Plot of the family - PF02056 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=166 Length=8
Motif2 Start=140 Length=11
Motif3 Start=70 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay