3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02055

Details:

PFam ID : PF02055

PFam Domain Description : O-Glycosyl hydrolase family 30

Number of Sequence in 50% Dataset : 167

Number of Sequence in Full Dataset : 502

Average sequence length: 330.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02055	E5S239_TRISP_26_544	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02055	B4HFX1_DROSE_12_79	99.4

Sequence based PCA Plot of the family - PF02055 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay