3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02052

Details:

PFam ID : PF02052

PFam Domain Description : Gallidermin

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 31

Average sequence length: 43.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02052	F2CEC6_STRSA_1_43	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02052	LANM_STRMU_1_22	100

Sequence based PCA Plot of the family - PF02052 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay