3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02050

Details:

PFam ID : PF02050

PFam Domain Description : Flagellar basal body-associated protein FliL

Number of Sequence in 50% Dataset : 300

Number of Sequence in Full Dataset : 564

Average sequence length: 120.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02050	C0FQE3_9FIRM_1_86	17.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02050	C0FQE3_9FIRM_1_86	98.4

Sequence based PCA Plot of the family - PF02050 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=55 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay