3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02046

Details:

PFam ID : PF02046

PFam Domain Description : Cytochrome c oxidase subunit VIa

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 188

Average sequence length: 103.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02046	D8TBX7_SELML_682_795	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02046	B6K001_SCHJY_5_147	100

Sequence based PCA Plot of the family - PF02046 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=134 Length=8
Motif4 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay