3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02045

Details:

PFam ID : PF02045

PFam Domain Description : CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 123

Average sequence length: 54.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02045	C9DR22_9ORYZ_14_48	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02045	Q7RG31_PLAYO_111_171	97.5

Sequence based PCA Plot of the family - PF02045 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay