3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02040

Details:

PFam ID : PF02040

PFam Domain Description : Arsenical pump membrane protein

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 426

Average sequence length: 334.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02040	P77014_ECOLI_1_66	56.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02040	E2LFF7_MONPE_3_162	99.7

Sequence based PCA Plot of the family - PF02040 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay