3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02035

Details:

PFam ID : PF02035

PFam Domain Description : Coagulin

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 5

Average sequence length: 138.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02035	Q7XYI2_BIGNA_66_183	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02035	COAG_TACTR_23_195	100

Sequence based PCA Plot of the family - PF02035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=4 Length=27
Motif2 Start=163 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay