3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02030

Details:

PFam ID : PF02030

PFam Domain Description : Hypothetical lipoprotein (MG045 family)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 23

Average sequence length: 383.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02030	Q98QE4_MYCPU_2_227	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02030	Q8EUR0_MYCPE_1_559	100

Sequence based PCA Plot of the family - PF02030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=37 Length=8
Motif4 Start=496 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay