3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02028

Details:

PFam ID : PF02028

PFam Domain Description : BCCT family transporter

Number of Sequence in 50% Dataset : 188

Number of Sequence in Full Dataset : 1131

Average sequence length: 454.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02028	E0M3T3_9ENTR_101_210	89.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02028	D3LR88_MICLU_49_84	100

Sequence based PCA Plot of the family - PF02028 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=79 Length=8
Motif3 Start=29 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay