3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02021

Details:

PFam ID : PF02021

PFam Domain Description : Uncharacterised protein family UPF0102

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 1076

Average sequence length: 92.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02021	B4VZG7_9CYAN_68_131	82.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02021	A6FEY4_9GAMM_17_122	100

Sequence based PCA Plot of the family - PF02021 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=8
Motif2 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay