3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02016

Details:

PFam ID : PF02016

PFam Domain Description : LD-carboxypeptidase

Number of Sequence in 50% Dataset : 219

Number of Sequence in Full Dataset : 803

Average sequence length: 275.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02016	F0EBG1_9PSED_2_46	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02016	E3QCZ4_COLGM_19_383	100

Sequence based PCA Plot of the family - PF02016 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=187 Length=8
Motif2 Start=117 Length=8
Motif3 Start=97 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay