3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02015

Details:

PFam ID : PF02015

PFam Domain Description : Glycosyl hydrolase family 45

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 140

Average sequence length: 175.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02015	D1ZJU8_SORMK_25_67	68.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02015	A1DD18_NEOFI_9_137	100

Sequence based PCA Plot of the family - PF02015 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=80 Length=8
Motif3 Start=113 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay