3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02013

Details:

PFam ID : PF02013

PFam Domain Description : Cellulose or protein binding domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 149

Average sequence length: 34.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02013	A0AW87_ARTS2_119_130	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02013	Q840B9_9GAMM_95_123	96.6

Sequence based PCA Plot of the family - PF02013 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=17 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay