3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02012

Details:

PFam ID : PF02012

PFam Domain Description : BNR/Asp-box repeat

Number of Sequence in 50% Dataset : 265

Number of Sequence in Full Dataset : 265

Average sequence length: 11.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02012	A0AW87_ARTS2_119_130	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02012	A4ANS0_MARSH_186_197	94.6

Sequence based PCA Plot of the family - PF02012 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay