3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02011

Details:

PFam ID : PF02011

PFam Domain Description : Glycosyl hydrolase family 48

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 90

Average sequence length: 503.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02011	Q19VP0_9DELT_497_714	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02011	D4N2V5_9CLOT_1_354	100

Sequence based PCA Plot of the family - PF02011 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=266 Length=22
Motif2 Start=247 Length=14
Motif3 Start=100 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay