3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02008

Details:

PFam ID : PF02008

PFam Domain Description : CXXC zinc finger domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 121

Average sequence length: 45.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02008	B8BUB0_THAPS_225_277	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02008	B8BUB0_THAPS_225_277	95

Sequence based PCA Plot of the family - PF02008 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=8
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay