3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02007

Details:

PFam ID : PF02007

PFam Domain Description : Tetrahydromethanopterin S-methyltransferase MtrH subunit

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 55

Average sequence length: 288.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02007	D5XDN1_THEPJ_6_295	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02007	D5XDN1_THEPJ_6_295	100

Sequence based PCA Plot of the family - PF02007 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=212 Length=11
Motif2 Start=26 Length=8
Motif3 Start=255 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay