3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02002

Details:

PFam ID : PF02002

PFam Domain Description : TFIIE alpha subunit

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 241

Average sequence length: 102.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02002	C7DID1_9EURY_103_200	67.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02002	D2UZ36_NAEGR_14_130	99.1

Sequence based PCA Plot of the family - PF02002 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay