3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01996

Details:

PFam ID : PF01996

PFam Domain Description : F420-0:Gamma-glutamyl ligase

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 385

Average sequence length: 230.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01996	Q8RBN7_THETN_14_510	63.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01996	B2A6U2_NATTJ_8_257	100

Sequence based PCA Plot of the family - PF01996 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=21
Motif2 Start=158 Length=8
Motif3 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay