3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01995

Details:

PFam ID : PF01995

PFam Domain Description : Domain of unknown function DUF128

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 79

Average sequence length: 225.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01995	D3SUV6_NATMM_83_195	53.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01995	B8E0N2_DICTD_84_326	100

Sequence based PCA Plot of the family - PF01995 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=211 Length=8
Motif2 Start=103 Length=8
Motif3 Start=84 Length=8
Motif4 Start=125 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay