3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01994

Details:

PFam ID : PF01994

PFam Domain Description : tRNA ribose 2'-O-methyltransferase, aTrm56

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 89

Average sequence length: 119.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01994	C7DIB3_9EURY_51_168	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01994	C7DIB3_9EURY_51_168	100

Sequence based PCA Plot of the family - PF01994 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=108 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8
Motif4 Start=65 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay