3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01993

Details:

PFam ID : PF01993

PFam Domain Description : methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 34

Average sequence length: 258.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01993	E7G694_9FIRM_1_138	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01993	D2RET8_ARCPA_1_253	100

Sequence based PCA Plot of the family - PF01993 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=4 Length=8
Motif2 Start=235 Length=8
Motif3 Start=166 Length=8
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay