3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01992

Details:

PFam ID : PF01992

PFam Domain Description : ATP synthase (C/AC39) subunit

Number of Sequence in 50% Dataset : 188

Number of Sequence in Full Dataset : 477

Average sequence length: 293.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01992	E7G694_9FIRM_1_138	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01992	D8MA17_BLAHO_18_385	100

Sequence based PCA Plot of the family - PF01992 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=172 Length=8
Motif3 Start=334 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay