3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01991

Details:

PFam ID : PF01991

PFam Domain Description : ATP synthase (E/31 kDa) subunit

Number of Sequence in 50% Dataset : 197

Number of Sequence in Full Dataset : 491

Average sequence length: 180.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01991	C4FTK6_9FIRM_10_146	56.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01991	A0BMT5_PARTE_11_248	100

Sequence based PCA Plot of the family - PF01991 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=230 Length=8
Motif3 Start=1 Length=8
Motif4 Start=215 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay