3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01990

Details:

PFam ID : PF01990

PFam Domain Description : ATP synthase (F/14-kDa) subunit

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 425

Average sequence length: 94.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01990	D2Z3Y1_9BACT_7_90	75.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01990	D5BXK3_NITHN_27_119	100

Sequence based PCA Plot of the family - PF01990 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=42 Length=8
Motif3 Start=1 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay