3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01988

Details:

PFam ID : PF01988

PFam Domain Description : VIT family

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 1054

Average sequence length: 166.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01988	D3S3F1_FERPA_22_104	52.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01988	D1R8E7_9CHLA_96_248	100

Sequence based PCA Plot of the family - PF01988 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=142 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay