3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01987

Details:

PFam ID : PF01987

PFam Domain Description : Mitochondrial biogenesis AIM24

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 778

Average sequence length: 202.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01987	A6WD87_KINRD_5_231	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01987	E0I8Q3_9BACL_11_198	100

Sequence based PCA Plot of the family - PF01987 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=136 Length=8
Motif3 Start=26 Length=8
Motif4 Start=266 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay