3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01986

Details:

PFam ID : PF01986

PFam Domain Description : Domain of unknown function DUF123

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 158

Average sequence length: 94.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01986	B3ELJ8_CHLPB_37_169	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01986	E0SQK0_IGNAA_75_178	100

Sequence based PCA Plot of the family - PF01986 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=17
Motif2 Start=118 Length=14
Motif3 Start=71 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay