3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01985

Details:

PFam ID : PF01985

PFam Domain Description : CRS1 / YhbY (CRM) domain

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 728

Average sequence length: 83.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01985	A5B5A7_VITVI_72_145	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01985	A8IUV5_CHLRE_120_206	100

Sequence based PCA Plot of the family - PF01985 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=43 Length=8
Motif3 Start=17 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay