3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01984

Details:

PFam ID : PF01984

PFam Domain Description : Double-stranded DNA-binding domain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 248

Average sequence length: 104.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01984	B3RV51_TRIAD_9_145	16

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01984	E9CF08_9EUKA_11_136	100

Sequence based PCA Plot of the family - PF01984 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=114 Length=8
Motif4 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay